whole genome sequence wgs assemblies Search Results


genome shotgun wgs sequencing  (Broad Clinical Labs)
96
Broad Clinical Labs genome shotgun wgs sequencing
Genome Shotgun Wgs Sequencing, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/Whole+Genome+Sequencing/pm20565626-171-2-22
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whole-genome sequencing  (Microsynth ag)
90
Microsynth ag whole-genome sequencing
Whole Genome Sequencing, supplied by Microsynth ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/whole+genome+sequencing/pmc09257628-151-0-23
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whole genome sequencing (wgs)  (SeqWright)
90
SeqWright whole genome sequencing (wgs)
Select vendors of commercial genomics and data storage services as of June 2012. The list is not exhaustive and is intended for initial guidance only
Whole Genome Sequencing (Wgs), supplied by SeqWright, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/whole+genome+sequencing/pmc03479671-0-0-7
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whole genome sequencing  (KU Leuven)
90
KU Leuven whole genome sequencing
Select vendors of commercial genomics and data storage services as of June 2012. The list is not exhaustive and is intended for initial guidance only
Whole Genome Sequencing, supplied by KU Leuven, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/whole+genome+sequencing/pmc06778821-20470-3-0
Average 90 stars, based on 1 article reviews
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genotyping 23andme  (23andMe)
90
23andMe genotyping 23andme
Select vendors of commercial genomics and data storage services as of June 2012. The list is not exhaustive and is intended for initial guidance only
Genotyping 23andme, supplied by 23andMe, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/23andme+gwas/pmc06257975-105-9-16
Average 90 stars, based on 1 article reviews
genotyping 23andme - by Bioz Stars, 2026-10
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long-read sequencing oxford nanopore promethion  (Oxford Nanopore)
90
Oxford Nanopore long-read sequencing oxford nanopore promethion
a Model showing the formation of mega-NUMTs and our strategy for their detection in <t>whole</t> <t>genome</t> <t>sequence</t> data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA <t>sequencing</t> depths. Modelling was based on whole genome nuclear sequencing <t>(WGS)</t> depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.
Long Read Sequencing Oxford Nanopore Promethion, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/oxford+nanopore+promethion/pmc07142097-118-18-15
Average 90 stars, based on 1 article reviews
long-read sequencing oxford nanopore promethion - by Bioz Stars, 2026-10
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whole genome sequencing  (Broad Institute Inc)
90
Broad Institute Inc whole genome sequencing
a Model showing the formation of mega-NUMTs and our strategy for their detection in <t>whole</t> <t>genome</t> <t>sequence</t> data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA <t>sequencing</t> depths. Modelling was based on whole genome nuclear sequencing <t>(WGS)</t> depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.
Whole Genome Sequencing, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/whole+genome+sequencing/pm36698131-252-0-17
Average 90 stars, based on 1 article reviews
whole genome sequencing - by Bioz Stars, 2026-10
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whole-genome sequencing (wgs)  (BGI Shenzhen)
90
BGI Shenzhen whole-genome sequencing (wgs)
a Model showing the formation of mega-NUMTs and our strategy for their detection in <t>whole</t> <t>genome</t> <t>sequence</t> data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA <t>sequencing</t> depths. Modelling was based on whole genome nuclear sequencing <t>(WGS)</t> depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.
Whole Genome Sequencing (Wgs), supplied by BGI Shenzhen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/whole+genome+sequencing/pmc09631701__advancesADV2021006654___suppl13-8-0-23
Average 90 stars, based on 1 article reviews
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whole-genome sequencing  (AgriGenome Labs)
90
AgriGenome Labs whole-genome sequencing
a Model showing the formation of mega-NUMTs and our strategy for their detection in <t>whole</t> <t>genome</t> <t>sequence</t> data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA <t>sequencing</t> depths. Modelling was based on whole genome nuclear sequencing <t>(WGS)</t> depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.
Whole Genome Sequencing, supplied by AgriGenome Labs, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/whole+genome+sequencing/pmc10817699-224-0-12
Average 90 stars, based on 1 article reviews
whole-genome sequencing - by Bioz Stars, 2026-10
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long-read whole-genome sequencing  (Oxford Nanopore)
90
Oxford Nanopore long-read whole-genome sequencing
a Model showing the formation of mega-NUMTs and our strategy for their detection in <t>whole</t> <t>genome</t> <t>sequence</t> data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA <t>sequencing</t> depths. Modelling was based on whole genome nuclear sequencing <t>(WGS)</t> depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.
Long Read Whole Genome Sequencing, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/long+read+whole+genome+sequencing/pm35882231-161-29-44
Average 90 stars, based on 1 article reviews
long-read whole-genome sequencing - by Bioz Stars, 2026-10
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whole genome sequencing wgs  (Novogene)
86
Novogene whole genome sequencing wgs
a Model showing the formation of mega-NUMTs and our strategy for their detection in <t>whole</t> <t>genome</t> <t>sequence</t> data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA <t>sequencing</t> depths. Modelling was based on whole genome nuclear sequencing <t>(WGS)</t> depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.
Whole Genome Sequencing Wgs, supplied by Novogene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/genome+sequencing+whole/pmc12846740-37-2-6
Average 86 stars, based on 1 article reviews
whole genome sequencing wgs - by Bioz Stars, 2026-10
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genome sequence wgs data sets  (Biotechnology Information)
86
Biotechnology Information genome sequence wgs data sets
Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from <t>57</t> <t>whole-genome</t> samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.
Genome Sequence Wgs Data Sets, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/whole+genome+sequence+wgs+assemblies/data+genome+sequencing+whole/pmc12977546-91-15-25
Average 86 stars, based on 1 article reviews
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Image Search Results


Select vendors of commercial genomics and data storage services as of June 2012. The list is not exhaustive and is intended for initial guidance only

Journal: Clinics in laboratory medicine

Article Title: Clinical Integration of Next Generation Sequencing Technology

doi: 10.1016/j.cll.2012.07.005

Figure Lengend Snippet: Select vendors of commercial genomics and data storage services as of June 2012. The list is not exhaustive and is intended for initial guidance only

Article Snippet: Whole Genome Sequencing (WGS) , Complete Genomics Seqwright , www.completegenomics.com www.seqwright.com , Using various NGS technologies they provide WGS services within several weeks to months of sample submission. The data is provided in a raw format without any interpretation of the variants..

Techniques: Sequencing, Software, Generated

a Model showing the formation of mega-NUMTs and our strategy for their detection in whole genome sequence data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA sequencing depths. Modelling was based on whole genome nuclear sequencing (WGS) depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.

Journal: Nature Communications

Article Title: Nuclear-mitochondrial DNA segments resemble paternally inherited mitochondrial DNA in humans

doi: 10.1038/s41467-020-15336-3

Figure Lengend Snippet: a Model showing the formation of mega-NUMTs and our strategy for their detection in whole genome sequence data. OH , origins of heavy-strand replication; OL , origins of light-strand replication. b Combined box and swarm plots show the estimated number of copies of the mtDNA-derived fragment within the NUMT in seven families. The middle “box” represents the median, lower and upper quartile of the data. The upper and lower whiskers represent the data outside the middle 50%. The dots represent the informative variants included in the mixed haplotype (Methods, Supplementary Table ). c Modelling of the estimated variant allelic fraction for a NUMT at different true mtDNA sequencing depths. Modelling was based on whole genome nuclear sequencing (WGS) depths seen in our dataset (35×, 40×, 45× and 50×), and the corresponding variant fraction based on the number of copies of mtDNA-derived fragment within the NUMT. 95% confident intervals are shown for one copy and 20 copies. d Detected variant allelic fraction for each of the seven families related to the true mtDNA per-base sequence depth. Upper and lower symbols show the trend of variant allelic fraction estimated from WGS depth 50× with 20 copies of mtDNA-derived fragments and WGS depth 35× with 1 copy of mtDNA-derived fragment.

Article Snippet: To validate our bioinformatic strategy for NUMT detection in short-read sequencing, we carried out long-read (Oxford Nanopore PromethION) whole genome sequencing (WGS) in five individuals from the NIHR BioResource - Rare Diseases project (Methods), where short-read WGS data was also available from the same individuals .

Techniques: Sequencing, Derivative Assay, Variant Assay

Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.

Journal: Journal of Clinical Microbiology

Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods

doi: 10.1128/jcm.01267-25

Figure Lengend Snippet: Clustering of the A. paragallinarum samples based on cgMLST. ( A ) Minimum spanning tree based on the allelic profiles of 1,170 core gene targets from 57 whole-genome samples using the SeqSphere+ software. ( B ) cgMLST dendrogram displaying 57 whole genome-sequenced A. paragallinarum samples. The distance matrix was built from all pairwise allelic profile comparisons of 1,170 cgMLST targets using the missing values as an own category option in SeqSphere+ software . Samples are color-coded by geographic origin, and dendrograms are rooted by the AP08_SA.

Article Snippet: A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas).

Techniques: Software

Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.

Journal: Journal of Clinical Microbiology

Article Title: A standardized, genome-guided MLST scheme for Avibacterium paragallinarum : enhanced epidemiological typing and validation against existing methods

doi: 10.1128/jcm.01267-25

Figure Lengend Snippet: Minimum spanning tree of whole genome-sequenced samples based on two MLST profiles color-coded based on their geographic origin. ( A ) Minimum spanning tree of the WGS samples created using the seven-locus MLST scheme described by Guo et al. . ( B ) Minimum spanning tree of the WGS samples created using the MLST scheme developed in this study.

Article Snippet: A total of 75 A. paragallinarum samples were used in the study, consisting of 45 whole-genome sequence (WGS) data sets from the National Center for Biotechnology Information (NCBI) database in March 2023 and 30 additional samples, including 25 clinical samples (frozen isolates in glycerol, active culture plates, or PCR-positive samples in BHI broth) and five WGS data sets obtained from state diagnostic laboratories, including Salisbury Animal Health Laboratory (SAHL; Salisbury, Maryland); Iowa State Diagnostic Laboratory (Ames, Iowa), Lasher Laboratory (Georgetown, Delaware), Ohio Animal Diseases Diagnostic Laboratory (ADDL; Reynoldsburg, Ohio), and CEVA Animal Health (Lenexa, Kansas).

Techniques: